Index

A

ACCEPTED (simdb.database.models.simulation.Simulation.Status attribute) (simdb.database.models.Simulation.Status attribute) add() (simdb.database.database.Session method) add_command() (simdb.cli.simdb.AliasCommandGroup method) add_commands() (in module simdb.cli.simdb) add_watcher() (simdb.cli.remote_api.RemoteAPI method) (simdb.database.Database method) (simdb.database.database.Database method) AGE (simdb.query.QueryType attribute) AGT (simdb.query.QueryType attribute) ALE (simdb.query.QueryType attribute) alias (simdb.cli.manifest.Manifest property) (simdb.database.models.Simulation attribute) (simdb.database.models.simulation.Simulation attribute)

AliasCommand (class in simdb.cli.commands.alias) AliasCommandGroup (class in simdb.cli.simdb) AliasGroup (class in simdb.cli.commands.alias) AliasSubGroup (class in simdb.cli.commands.alias) AliasValidator (class in simdb.cli.manifest) ALL (simdb.imas.metadata.ReadValues attribute) (simdb.notifications.Notification attribute) ALT (simdb.query.QueryType attribute) api_version (simdb.config.Config property) (simdb.config.config.Config property) APIConstants (class in simdb.remote) APIError auth (simdb.uri.Authority attribute) Authority (class in simdb.uri) authority (simdb.uri.URI attribute)

B

Base (class in simdb.database.models)

BaseModel (class in simdb.database.models.base)

C

cache_ok (simdb.database.models.types.UUID attribute) check_meta_args() (in module simdb.cli.commands) check_return() (in module simdb.cli.remote_api) check_time() (in module simdb.imas.utils) checked_get() (in module simdb.database.models.utils) checkers (simdb.validation.validator.CustomValidator attribute) checksum (simdb.database.models.File attribute) (simdb.database.models.file.File attribute) checksum() (in module simdb.imas.checksum) (in module simdb.uda.checksum) ChoiceType (class in simdb.database.models.types) close() (simdb.database.Database method) (simdb.database.database.Database method) coercers (simdb.validation.validator.CustomValidator attribute)

commit() (simdb.database.database.Session method) Config (class in simdb.config) (class in simdb.config.config) config_directory (simdb.config.Config property) (simdb.config.config.Config property) CONFIG_FILE_NAME (simdb.config.Config attribute) (simdb.config.config.Config attribute) ConfigError, [1] configure() (simdb.validation.file.ids_validator.IdsValidator method) (simdb.validation.file.validator_base.FileValidatorBase method) convert_uri() (in module simdb.imas.utils) CustomDecoder (class in simdb.json) CustomEncoder (class in simdb.json) CustomValidator (class in simdb.validation.validator)

D

data() (simdb.database.models.base.BaseModel method) (simdb.database.models.File method) (simdb.database.models.file.File method) (simdb.database.models.MetaData method) (simdb.database.models.metadata.MetaData method) (simdb.database.models.Simulation method) (simdb.database.models.simulation.Simulation method) (simdb.database.models.Watcher method) (simdb.database.models.watcher.Watcher method) Database (class in simdb.database) (class in simdb.database.database) Database.DBMS (class in simdb.database) (class in simdb.database.database) DatabaseError, [1] DataObject (class in simdb.cli.manifest) DataObject.Type (class in simdb.cli.manifest) DataObjectValidator (class in simdb.cli.manifest) datetime (simdb.database.models.File attribute) (simdb.database.models.file.File attribute) (simdb.database.models.Simulation attribute) (simdb.database.models.simulation.Simulation attribute) DBEntry (class in simdb.imas.utils)

debug (simdb.config.Config property) (simdb.config.config.Config property) default() (simdb.json.CustomEncoder method) default_remote (simdb.config.Config property) (simdb.config.config.Config property) default_setters (simdb.validation.validator.CustomValidator attribute) delete() (simdb.cli.remote_api.RemoteAPI method) (simdb.database.database.Session method) delete_metadata() (simdb.cli.remote_api.RemoteAPI method) delete_option() (simdb.config.Config method) (simdb.config.config.Config method) delete_section() (simdb.config.Config method) (simdb.config.config.Config method) delete_simulation() (simdb.cli.remote_api.RemoteAPI method) (simdb.database.Database method) (simdb.database.database.Database method) DELETED (simdb.database.models.simulation.Simulation.Status attribute) (simdb.database.models.Simulation.Status attribute) DEPRECATED (simdb.database.models.simulation.Simulation.Status attribute) (simdb.database.models.Simulation.Status attribute) DescriptionValidator (class in simdb.cli.manifest) DictValuesValidator (class in simdb.cli.manifest) digest() (simdb.imas.checksum.Hash method)

E

element (simdb.database.models.MetaData attribute) (simdb.database.models.metadata.MetaData attribute) email (simdb.database.models.Watcher attribute) (simdb.database.models.watcher.Watcher attribute) EmailServer (class in simdb.email.server) empty() (simdb.uri.Authority class method) (simdb.uri.Query class method)

engine (simdb.database.Database attribute) (simdb.database.database.Database attribute) EQ (simdb.query.QueryType attribute) EXIST (simdb.query.QueryType attribute) expected_keys (simdb.cli.manifest.DictValuesValidator attribute) (simdb.cli.manifest.ListValuesValidator attribute) extract_ids_occurrence() (in module simdb.imas.utils) extract_ids_path() (in module simdb.imas.metadata)

F

FAILED (simdb.database.models.simulation.Simulation.Status attribute) (simdb.database.models.Simulation.Status attribute) FailedConnection fetch_metric() (in module simdb.imas.metadata) File (class in simdb.database.models) (class in simdb.database.models.file) FILE (simdb.cli.manifest.DataObject.Type attribute) file_paths() (simdb.database.models.Simulation method) (simdb.database.models.simulation.Simulation method) FileSystem (class in simdb.cli.file_system) FileValidatorBase (class in simdb.validation.file.validator_base) find_file_validator() (in module simdb.validation.file) find_meta() (simdb.database.models.Simulation method) (simdb.database.models.simulation.Simulation method)

flatten_dict() (in module simdb.database.models.utils) forbidden_characters (simdb.cli.manifest.MetaDataValidator attribute) format_usage() (simdb.cli.commands.alias.AliasSubGroup method) (simdb.cli.commands.remote.RemoteSubGroup method) fragment (simdb.uri.URI attribute) from_data() (simdb.database.models.base.BaseModel class method) (simdb.database.models.File class method) (simdb.database.models.file.File class method) (simdb.database.models.MetaData class method) (simdb.database.models.metadata.MetaData class method) (simdb.database.models.Simulation class method) (simdb.database.models.simulation.Simulation class method) (simdb.database.models.Watcher class method) (simdb.database.models.watcher.Watcher class method) from_template() (simdb.cli.manifest.Manifest class method)

G

GE (simdb.query.QueryType attribute) generate_checksum() (simdb.database.models.File method) (simdb.database.models.file.File method) get() (simdb.cli.remote_api.RemoteAPI method) (simdb.uri.Query method) get_aliases() (simdb.database.Database method) (simdb.database.database.Database method) get_api_version() (simdb.cli.remote_api.RemoteAPI method) get_command() (simdb.cli.simdb.AliasCommandGroup method) get_creation_date() (simdb.database.models.File method) (simdb.database.models.file.File method) get_directory() (simdb.cli.remote_api.RemoteAPI method) get_endpoints() (simdb.cli.remote_api.RemoteAPI method) get_file() (simdb.database.Database method) (simdb.database.database.Database method) get_loader() (in module simdb.cli.manifest) get_local_db() (in module simdb.database) (in module simdb.database.database) get_metadata() (simdb.database.Database method) (simdb.database.database.Database method) get_option() (simdb.config.Config method) (simdb.config.config.Config method)

get_path_for_legacy_uri() (in module simdb.imas.utils) get_section() (simdb.config.Config method) (simdb.config.config.Config method) get_server_authentication() (simdb.cli.remote_api.RemoteAPI method) get_server_version() (simdb.cli.remote_api.RemoteAPI method) get_simulation() (simdb.cli.remote_api.RemoteAPI method) (simdb.database.Database method) (simdb.database.database.Database method) get_simulation_children() (simdb.database.Database method) (simdb.database.database.Database method) get_simulation_data() (simdb.database.Database method) (simdb.database.database.Database method) get_simulation_parents() (simdb.database.Database method) (simdb.database.database.Database method) get_string_option() (simdb.config.Config method) (simdb.config.config.Config method) get_token() (simdb.cli.remote_api.RemoteAPI method) get_upload_options() (simdb.cli.remote_api.RemoteAPI method) get_validation_schemas() (simdb.cli.remote_api.RemoteAPI method) GT (simdb.query.QueryType attribute)

H

has_url() (simdb.cli.remote_api.RemoteAPI method)

Hash (class in simdb.imas.checksum) host (simdb.uri.Authority attribute)

I

id (simdb.database.models.File attribute) (simdb.database.models.file.File attribute) (simdb.database.models.MetaData attribute) (simdb.database.models.metadata.MetaData attribute) (simdb.database.models.Simulation attribute) (simdb.database.models.simulation.Simulation attribute) (simdb.database.models.Watcher attribute) (simdb.database.models.watcher.Watcher attribute) IdsValidator (class in simdb.validation.file.ids_validator) IMAS (simdb.cli.manifest.DataObject.Type attribute) imas_files() (in module simdb.imas.utils) imas_timestamp() (in module simdb.imas.utils) ImasError impl (simdb.database.models.types.ChoiceType attribute) (simdb.database.models.types.URI attribute) (simdb.database.models.types.UUID attribute)

IN (simdb.query.QueryType attribute) inherit_docstrings() (in module simdb.docstrings) inputs (simdb.cli.manifest.Manifest property) (simdb.database.models.Simulation attribute) (simdb.database.models.simulation.Simulation attribute) InputsValidator (class in simdb.cli.manifest) insert_simulation() (simdb.database.Database method) (simdb.database.database.Database method) InvalidAlias InvalidManifest is_empty() (in module simdb.cli.commands.alias) (in module simdb.cli.commands.remote) is_missing() (in module simdb.imas.utils)

L

LE (simdb.query.QueryType attribute) LIMIT_HEADER (simdb.remote.APIConstants attribute) list_all_occurrences() (simdb.imas.utils.DBEntry method) list_commands() (simdb.cli.simdb.AliasCommandGroup method) list_files() (simdb.database.Database method) (simdb.database.database.Database method) list_idss() (in module simdb.imas.utils) list_metadata_keys() (simdb.database.Database method) (simdb.database.database.Database method) list_metadata_values() (simdb.database.Database method) (simdb.database.database.Database method) list_options() (simdb.config.Config method) (simdb.config.config.Config method) list_simulation_data() (simdb.database.Database method) (simdb.database.database.Database method)

list_simulations() (simdb.cli.remote_api.RemoteAPI method) (simdb.database.Database method) (simdb.database.database.Database method) list_watchers() (simdb.cli.remote_api.RemoteAPI method) (simdb.database.Database method) (simdb.database.database.Database method) ListValuesValidator (class in simdb.cli.manifest) load() (simdb.cli.manifest.Manifest method) (simdb.config.Config method) (simdb.config.config.Config method) load_dialect_impl() (simdb.database.models.types.UUID method) load_imas_metadata() (in module simdb.imas.metadata) load_metadata() (in module simdb.imas.metadata) LoadError LT (simdb.query.QueryType attribute)

M

main() (in module simdb.cli.simdb) Manifest (class in simdb.cli.manifest) manifest_version (simdb.cli.manifest.Manifest property) ManifestValidator (class in simdb.cli.manifest) meta (simdb.database.models.Simulation attribute) (simdb.database.models.simulation.Simulation attribute) meta_dict() (simdb.database.models.Simulation method) (simdb.database.models.simulation.Simulation method) MetaData (class in simdb.database.models) (class in simdb.database.models.metadata) metadata (simdb.cli.manifest.Manifest property) (simdb.database.models.Base attribute) MetaDataValidator (class in simdb.cli.manifest) MetricException module simdb simdb.checksum simdb.cli simdb.cli.commands simdb.cli.commands.alias simdb.cli.commands.config simdb.cli.commands.database simdb.cli.commands.manifest simdb.cli.commands.provenance simdb.cli.commands.remote simdb.cli.commands.simulation simdb.cli.commands.utils simdb.cli.commands.validators simdb.cli.file_system simdb.cli.manifest simdb.cli.remote_api simdb.cli.simdb simdb.config simdb.config.config simdb.database simdb.database.database simdb.database.models simdb.database.models.base simdb.database.models.file simdb.database.models.metadata simdb.database.models.simulation simdb.database.models.types simdb.database.models.utils simdb.database.models.watcher simdb.docstrings simdb.email simdb.email.server simdb.imas simdb.imas.checksum simdb.imas.metadata simdb.imas.utils simdb.json simdb.notifications simdb.query simdb.remote simdb.remote.core simdb.uda simdb.uda.checksum simdb.uri simdb.validation simdb.validation.file simdb.validation.file.ids_validator simdb.validation.file.validator_base simdb.validation.validator

MSSQL (simdb.database.database.Database.DBMS attribute) (simdb.database.Database.DBMS attribute)

N

n_required_args_adaptor() (in module simdb.cli.commands.simulation) name (simdb.cli.manifest.DataObject property) NameValueOption (class in simdb.cli.commands.simulation) ndarray_constructor() (in module simdb.cli.manifest) NE (simdb.query.QueryType attribute) NI (simdb.query.QueryType attribute) NONE (simdb.query.QueryType attribute) normalization_rules (simdb.validation.validator.CustomValidator attribute) NOT_VALIDATED (simdb.database.models.simulation.Simulation.Status attribute) (simdb.database.models.Simulation.Status attribute)

NOTHING (simdb.config.Config attribute) (simdb.config.config.Config attribute) Notification (class in simdb.notifications) notification (simdb.database.models.Watcher attribute) (simdb.database.models.watcher.Watcher attribute) NOTIFICATION_CHOICES (simdb.database.models.Watcher attribute) (simdb.database.models.watcher.Watcher attribute) np (simdb.validation.validator.CustomValidator attribute)

O

OBSOLESCENCE (simdb.notifications.Notification attribute) open_imas() (in module simdb.imas.utils) options() (simdb.validation.file.ids_validator.IdsValidator method) (simdb.validation.file.validator_base.FileValidatorBase method)

outputs (simdb.cli.manifest.Manifest property) (simdb.database.models.Simulation attribute) (simdb.database.models.simulation.Simulation attribute) OutputsValidator (class in simdb.cli.manifest)

P

PAGE_HEADER (simdb.remote.APIConstants attribute) parse_args() (simdb.cli.commands.alias.AliasCommand method) (simdb.cli.commands.alias.AliasGroup method) (simdb.cli.commands.remote.RemoteGroup method) parse_query_arg() (in module simdb.query) partial_get() (simdb.imas.utils.DBEntry method) PASSED (simdb.database.models.simulation.Simulation.Status attribute) (simdb.database.models.Simulation.Status attribute) patch() (simdb.cli.remote_api.RemoteAPI method) path (simdb.uri.URI attribute) port (simdb.uri.Authority attribute) post() (simdb.cli.remote_api.RemoteAPI method) POSTGRESQL (simdb.database.database.Database.DBMS attribute) (simdb.database.Database.DBMS attribute) print_simulations() (in module simdb.cli.commands.utils)

print_trace() (in module simdb.cli.commands.utils) process_bind_param() (simdb.database.models.types.ChoiceType method) (simdb.database.models.types.URI method) (simdb.database.models.types.UUID method) process_literal_param() (simdb.database.models.types.ChoiceType method) (simdb.database.models.types.URI method) (simdb.database.models.types.UUID method) process_result_value() (simdb.database.models.types.ChoiceType method) (simdb.database.models.types.URI method) (simdb.database.models.types.UUID method) pull_simulation() (simdb.cli.remote_api.RemoteAPI method) push_simulation() (simdb.cli.remote_api.RemoteAPI method) put() (simdb.cli.remote_api.RemoteAPI method) python_type (simdb.database.models.types.ChoiceType property) (simdb.database.models.types.URI property) (simdb.database.models.types.UUID property)

Q

Query (class in simdb.uri) query (simdb.uri.URI attribute) query() (simdb.database.database.Session method) query_compare() (in module simdb.query) query_meta() (simdb.database.Database method) (simdb.database.database.Database method)

query_meta_data() (simdb.database.Database method) (simdb.database.database.Database method) query_simulations() (simdb.cli.remote_api.RemoteAPI method) QueryType (class in simdb.query)

R

read_bytes() (in module simdb.cli.remote_api) ReadValues (class in simdb.imas.metadata) recursive_help() (in module simdb.cli.simdb) registry (simdb.database.models.Base attribute) remote (simdb.cli.remote_api.RemoteAPI property) remote_command_cls() (in module simdb.cli.commands.remote) RemoteAPI (class in simdb.cli.remote_api) RemoteError RemoteGroup (class in simdb.cli.commands.remote) RemoteSubGroup (class in simdb.cli.commands.remote) remove() (simdb.database.Database method) (simdb.database.database.Database method) (simdb.uri.Query method) remove_meta() (simdb.database.models.Simulation method) (simdb.database.models.simulation.Simulation method)

remove_watcher() (simdb.cli.remote_api.RemoteAPI method) (simdb.database.Database method) (simdb.database.database.Database method) required_keys (simdb.cli.manifest.DictValuesValidator attribute) (simdb.cli.manifest.ListValuesValidator attribute) reset() (simdb.database.Database method) (simdb.database.database.Database method) reset_database() (simdb.cli.remote_api.RemoteAPI method) responsible_name (simdb.cli.manifest.Manifest property) ResponsibleValidator (class in simdb.cli.manifest) REVISION (simdb.notifications.Notification attribute) rollback() (simdb.database.database.Session method) rules (simdb.validation.validator.CustomValidator attribute)

S

save() (simdb.cli.manifest.Manifest method) (simdb.config.Config method) (simdb.config.config.Config method) scheme (simdb.uri.URI attribute) section_name (simdb.cli.manifest.DictValuesValidator attribute) (simdb.cli.manifest.ListValuesValidator attribute) sections() (simdb.config.Config method) (simdb.config.config.Config method) SELECTED (simdb.imas.metadata.ReadValues attribute) send_message() (simdb.email.server.EmailServer method) Session (class in simdb.database.database) session (simdb.database.database.Database attribute) set() (simdb.uri.Query method) set_meta() (simdb.database.models.Simulation method) (simdb.database.models.simulation.Simulation method) set_metadata() (simdb.cli.remote_api.RemoteAPI method) set_option() (simdb.config.Config method) (simdb.config.config.Config method) sha1_checksum() (in module simdb.checksum) sim_id (simdb.database.models.MetaData attribute) (simdb.database.models.metadata.MetaData attribute) simdb module simdb.checksum module simdb.cli module simdb.cli.commands module simdb.cli.commands.alias module simdb.cli.commands.config module simdb.cli.commands.database module simdb.cli.commands.manifest module simdb.cli.commands.provenance module simdb.cli.commands.remote module simdb.cli.commands.simulation module simdb.cli.commands.utils module simdb.cli.commands.validators module simdb.cli.file_system module simdb.cli.manifest module simdb.cli.remote_api module simdb.cli.simdb module simdb.config module simdb.config.config module simdb.database module simdb.database.database module simdb.database.models module

simdb.database.models.base module simdb.database.models.file module simdb.database.models.metadata module simdb.database.models.simulation module simdb.database.models.types module simdb.database.models.utils module simdb.database.models.watcher module simdb.docstrings module simdb.email module simdb.email.server module simdb.imas module simdb.imas.checksum module simdb.imas.metadata module simdb.imas.utils module simdb.json module simdb.notifications module simdb.query module simdb.remote module simdb.remote.core module simdb.uda module simdb.uda.checksum module simdb.uri module simdb.validation module simdb.validation.file module simdb.validation.file.ids_validator module simdb.validation.file.validator_base module simdb.validation.validator module Simulation (class in simdb.database.models) (class in simdb.database.models.simulation) Simulation.Status (class in simdb.database.models) (class in simdb.database.models.simulation) Sink (class in simdb.cli.manifest) SORT_ASC_HEADER (simdb.remote.APIConstants attribute) SORT_BY_HEADER (simdb.remote.APIConstants attribute) Source (class in simdb.cli.manifest) SQLITE (simdb.database.database.Database.DBMS attribute) (simdb.database.Database.DBMS attribute) status (simdb.database.models.Simulation property) (simdb.database.models.simulation.Simulation property)

T

TestParameters (class in simdb.validation) (class in simdb.validation.validator) trace_simulation() (simdb.cli.remote_api.RemoteAPI method) try_request() (in module simdb.cli.remote_api)

type (simdb.cli.manifest.DataObject attribute) (simdb.database.models.File attribute) (simdb.database.models.file.File attribute) type_cast_value() (simdb.cli.commands.simulation.NameValueOption method) types_mapping (simdb.validation.validator.CustomValidator attribute)

U

UDA (simdb.cli.manifest.DataObject.Type attribute) unflatten_dict() (in module simdb.database.models.utils) UNKNOWN (simdb.cli.manifest.DataObject.Type attribute) update() (simdb.imas.checksum.Hash method) update_simulation() (simdb.cli.remote_api.RemoteAPI method) URI (class in simdb.database.models.types) (class in simdb.uri) uri (simdb.cli.manifest.DataObject attribute) (simdb.database.models.File attribute) (simdb.database.models.file.File attribute) (simdb.uri.URI property)

URIParserError user_config_path (simdb.config.Config property) (simdb.config.config.Config property) username (simdb.database.models.Watcher attribute) (simdb.database.models.watcher.Watcher attribute) UUID (class in simdb.database.models.types) (simdb.cli.manifest.DataObject.Type attribute) uuid (simdb.database.models.File attribute) (simdb.database.models.file.File attribute) (simdb.database.models.Simulation attribute) (simdb.database.models.simulation.Simulation attribute)

V

validate() (simdb.cli.manifest.AliasValidator method) (simdb.cli.manifest.DataObjectValidator method) (simdb.cli.manifest.DictValuesValidator method) (simdb.cli.manifest.ListValuesValidator method) (simdb.cli.manifest.Manifest method) (simdb.cli.manifest.ManifestValidator method) (simdb.cli.manifest.MetaDataValidator method) (simdb.cli.manifest.VersionValidator method) (simdb.validation.Validator method) (simdb.validation.validator.Validator method) validate_email() (simdb.database.models.Watcher method) (simdb.database.models.watcher.Watcher method) validate_meta() (simdb.database.models.Simulation method) (simdb.database.models.simulation.Simulation method) validate_non_negative() (in module simdb.cli.commands.validators) validate_positive() (in module simdb.cli.commands.validators)

validate_simulation() (simdb.cli.remote_api.RemoteAPI method) validate_uri() (simdb.validation.file.ids_validator.IdsValidator method) (simdb.validation.file.validator_base.FileValidatorBase method) VALIDATION (simdb.notifications.Notification attribute) validation_rules (simdb.validation.validator.CustomValidator attribute) validation_schemas() (simdb.validation.Validator class method) (simdb.validation.validator.Validator class method) ValidationError, [1] Validator (class in simdb.validation) (class in simdb.validation.validator) value (simdb.database.models.MetaData attribute) (simdb.database.models.metadata.MetaData attribute) verbose (simdb.config.Config property) (simdb.config.config.Config property) version (simdb.cli.manifest.Manifest property) (simdb.cli.manifest.ManifestValidator attribute) VersionValidator (class in simdb.cli.manifest)

W

walk_dict() (in module simdb.imas.metadata) walk_imas() (in module simdb.imas.metadata) Watcher (class in simdb.database.models) (class in simdb.database.models.watcher)

watchers (simdb.database.models.Simulation attribute) (simdb.database.models.simulation.Simulation attribute) WorkflowValidator (class in simdb.cli.manifest)